| Shifting balance on a static mutation–selection landscape: a novel scenario of positive selection CT Jones, N Youssef, E Susko, JP Bielawski Molecular biology and evolution 34 (2), 391-407, 2016 | 35 | 2016 |
| Learning from prepandemic data to forecast viral escape NN Thadani, S Gurev, P Notin, N Youssef, NJ Rollins, D Ritter, C Sander, ... Nature 622 (7984), 818-825, 2023 | 33* | 2023 |
| Phenomenological load on model parameters can lead to false biological conclusions CT Jones, N Youssef, E Susko, JP Bielawski Molecular biology and evolution 35 (6), 1473-1488, 2018 | 28 | 2018 |
| Introduction to genome biology and diversity N Youssef, A Budd, JP Bielawski Evolutionary Genomics: Statistical and Computational Methods, 3-31, 2019 | 21 | 2019 |
| A phenotype–genotype codon model for detecting adaptive evolution CT Jones, N Youssef, E Susko, JP Bielawski Systematic biology 69 (4), 722-738, 2020 | 13 | 2020 |
| An unusual evolutionary strategy: the origins, genetic repertoire, and implications of doubly uniparental inheritance of mitochondrial DNA in bivalves DT Stewart, S Breton, EE Chase, BM Robicheau, S Bettinazzi, E Pante, ... Evolutionary biology—A transdisciplinary approach, 301-323, 2020 | 11 | 2020 |
| Consequences of stability-induced epistasis for substitution rates N Youssef, E Susko, JP Bielawski Molecular Biology and Evolution 37 (11), 3131-3148, 2020 | 7 | 2020 |
| Evolution of amino acid propensities under stability-mediated epistasis N Youssef, E Susko, AJ Roger, JP Bielawski Molecular Biology and Evolution 39 (3), msac030, 2022 | 5 | 2022 |
| Shifts in amino acid preferences as proteins evolve: a synthesis of experimental and theoretical work N Youssef, E Susko, AJ Roger, JP Bielawski Protein Science 30 (10), 2009-2028, 2021 | 4 | 2021 |
| Expanding the search for sperm transmission elements in the mitochondrial genomes of bivalve mollusks DT Stewart, BM Robicheau, N Youssef, MA Garrido-Ramos, EE Chase, ... Genes 12 (8), 1211, 2021 | 3 | 2021 |
| Protein design for evaluating vaccines against future viral variation N Youssef, S Gurev, F Ghantous, K Brock, J Jaimes, NN Thadani, ... bioRxiv, 2023.10. 08.561389, 2023 | 1 | 2023 |
| Deep generative models predict SARS-CoV-2 Spike infectivity and foreshadow neutralizing antibody escape (preprint) NA Youssef, F Ghantous, S Gurev, K Brock, JA Jaimes, A Dauphin, ... | | 2023 |
| Learning from pre-pandemic data to forecast viral antibody escape (preprint) NN Thadani, S Gurev, P Notin, N Youssef, NJ Rollins, C Sander, Y Gal, ... | | 2022 |
| Evolutionary dynamics under a stability-constrained model N Youssef | | 2021 |
| The ups and downs of amino acid co-evolution: evolutionary Stokes and anti-Stokes shifts N Youssef, E Susko, AJ Roger, JP Bielawski bioRxiv, 2020.08. 31.271775, 2020 | | 2020 |
