| Ecosystem fluxes during drought and recovery in an experimental forest C Werner, LK Meredith, SN Ladd, J Ingrisch, A Kübert, J van Haren, ... Science 374 (6574), 1514-1518, 2021 | 72 | 2021 |
| Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites JD Fudyma, J Lyon, R AminiTabrizi, H Gieschen, RK Chu, DW Hoyt, ... Plant Direct 3 (11), e00179, 2019 | 63 | 2019 |
| Controls on soil organic matter degradation and subsequent greenhouse gas emissions across a permafrost thaw gradient in Northern Sweden R AminiTabrizi, RM Wilson, JD Fudyma, SB Hodgkins, HM Heyman, ... Frontiers in Earth Science 8, 557961, 2020 | 38 | 2020 |
| Coupled biotic-abiotic processes control biogeochemical cycling of dissolved organic matter in the columbia river hyporheic zone JD Fudyma, RK Chu, N Graf Grachet, JC Stegen, MM Tfaily Frontiers in Water 2, 574692, 2021 | 16 | 2021 |
| MetaboDirect: an analytical pipeline for the processing of FT-ICR MS-based metabolomic data C Ayala-Ortiz, N Graf-Grachet, V Freire-Zapata, J Fudyma, G Hildebrand, ... Microbiome 11 (1), 28, 2023 | 14 | 2023 |
| Elucidating Drought-Tolerance Mechanisms in Plant Roots through 1H NMR Metabolomics in Parallel with MALDI-MS, and NanoSIMS Imaging Techniques LK Honeker, GA Hildebrand, JD Fudyma, LE Daber, D Hoyt, SE Flowers, ... Environmental Science & Technology 56 (3), 2021-2032, 2022 | 13 | 2022 |
| Sequential abiotic‐biotic processes drive organic carbon transformation in peat bogs JD Fudyma, JG Toyoda, RK Chu, KK Weitz, HM Heyman, E Eder, ... Journal of Geophysical Research: Biogeosciences 126 (3), e2020JG006079, 2021 | 10 | 2021 |
| Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites. Plant Direct 3: e00179 JD Fudyma, J Lyon, R AminiTabrizi, H Gieschen, RK Chu, DW Hoyt, ... | 8 | 2019 |
| Dispersal, habitat filtering, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography AM Ter Horst, JD Fudyma, JL Sones, JB Emerson The ISME Journal 17 (11), 2079-2089, 2023 | 6 | 2023 |
| Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest LK Honeker, G Pugliese, J Ingrisch, J Fudyma, J Gil-Loaiza, E Carpenter, ... Nature Microbiology 8 (8), 1480-1494, 2023 | 4 | 2023 |
| Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants GA Hildebrand, LK Honeker, V Freire-Zapata, C Ayala-Ortiz, ... Science of the Total Environment 899, 165689, 2023 | 3 | 2023 |
| RNA viral communities are structured by host plant phylogeny in oak and conifer leaves AM ter Horst, JD Fudyma, A Bak, MS Hwang, C Santos-Medellín, ... Phytobiomes Journal 7 (2), 288-296, 2023 | 3 | 2023 |
| Almond rhizosphere viral, prokaryotic, and fungal communities differed significantly among four California orchards and in comparison to bulk soil communities AM ter Horst, TV Adebiyi, DA Hernandez, JD Fudyma, JB Emerson bioRxiv, 2023.06. 03.543555, 2023 | 1 | 2023 |
| Effect of drought on soil microbial metabolisms driving carbon allocation and volatile organic compound cycling in the tropical rainforest at Biosphere 2 L Honeker, G Pugliese, J Ingrisch, J Fudyma, J Gil-Loaiza, E Carpenter, ... Authorea Preprints, 2022 | 1 | 2022 |
| Soil Viromics Protocol-Emerson Lab v1 J Emerson, S Geonczy, CS Medellin, A Ter Horst, J Fudyma | 1 | 2022 |
| Untargeted metabolic profiling of Sphagnum fallax from boreal peatlands identifies antimicrobial compounds and novel metabolites J Fudyma, J Lyon, R AminiTabrizi, H Gieschen, RK Chu, DW Hoyt, ... AGU Fall Meeting Abstracts 2019, B13G-2584, 2019 | 1 | 2019 |
| Selenium, uranium, and nitrate: treatment of troublesome contaminants in mining wastewaters—EBR case studies AO Opara, J Adams, J Fudyma, J Bowden J Am Soc Min Reclam 7, 19-34, 2018 | 1 | 2018 |
| The mobilization and transport of newly fixed carbon are driven by plant water use in an experimental rainforest under drought J Huang, SN Ladd, J Ingrisch, A Kübert, LK Meredith, J van Haren, ... Journal of Experimental Botany 75 (8), 2545-2557, 2024 | | 2024 |
| Environment-specific virocell metabolic reprogramming C Howard-Varona, MM Lindback, JD Fudyma, A Krongauz, ... The ISME Journal, wrae055, 2024 | | 2024 |
| Exploring viral particle, soil, and extraction buffer physicochemical characteristics and their impacts on extractable viral communities JD Fudyma, AM ter Horst, C Santos-Medellin, J Sorensen, G Gogul, ... Soil Biology and Biochemistry, 109419, 2024 | | 2024 |
