Tulio de Oliveira

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Richard LessellsSenior Infectious Diseases Specialist, University of KwaZulu-NatalVerified email at ukzn.ac.za
Deenan PillayVerified email at africacentre.ac.za
Salim S. Abdool KarimDirector: CAPRISAVerified email at ukzn.ac.za
Frank TanserSchool for Data Science, Stellenbosch University & Senior Faculty, AHRI, South AfricaVerified email at sun.ac.za
Susan EngelbrechtStellenbosch University and NHLSVerified email at sun.ac.za
Theresa RossouwDepartment of Immunology, University of PretoriaVerified email at up.ac.za
Christopher SeebregtsJembi Health SystemsVerified email at jembi.org
Darren MartinUniversity of Cape TownVerified email at uct.ac.za
Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Till Winfried BärnighausenHeidelberg Institute of Global Health, Faculty of Medicine and University Hospital, HeidelbergVerified email at uni-heidelberg.de
Lynn MorrisNational Institute for Communicable DiseasesVerified email at nicd.ac.za
Justen ManasaAssociate Professor, University of Zimbabwe, Harare, ZimbabweVerified email at uz.edu.zw
Nuno R. FariaProfessor, Imperial College London / University of São PauloVerified email at ic.ac.uk
Robert ShaferProfessor of Medicine, Stanford UniversityVerified email at stanford.edu
Marco SalemiHolloway Chair and Professor of Experimental PathologyVerified email at pathology.ufl.edu
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Wolfgang PreiserProfessor and Head: Division of Medical Virology, Stellenbosch University / NHLS TygerbergVerified email at sun.ac.za
Collins IwujiDepartment of Global Health & Infection, Brighton & Sussex Medical School, UKVerified email at bsms.ac.uk
Gert van ZylDivision of Medical Virology, Stellenbosch University and NHLS TygerbergVerified email at sun.ac.za
Ana AbecasisGlobal Health and Tropical Medicine, Instituto de Higiene e Medicina Tropical, NOVA Univ LisboaVerified email at ihmt.unl.pt

Tulio de Oliveira

Stellenbosch University

Verified email at sun.ac.za - Homepage

Bioinformatics Genomics Phylogenetics Viruses


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022	1584	2022
Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021	1581	2021
Efficacy of the ChAdOx1 nCoV-19 Covid-19 vaccine against the B. 1.351 variant SA Madhi, V Baillie, CL Cutland, M Voysey, AL Koen, L Fairlie, ... New England Journal of Medicine 384 (20), 1885-1898, 2021	1423	2021
SARS-CoV-2 501Y. V2 escapes neutralization by South African COVID-19 donor plasma CK Wibmer, F Ayres, T Hermanus, M Madzivhandila, P Kgagudi, ... Nature medicine 27 (4), 622-625, 2021	1324	2021
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... medrxiv, 2020.12. 21.20248640, 2020	1222	2020
Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ... Nature 602 (7898), 654-656, 2022	1091	2022
The biological and clinical significance of emerging SARS-CoV-2 variants K Tao, PL Tzou, J Nouhin, RK Gupta, T de Oliveira, SL Kosakovsky Pond, ... Nature Reviews Genetics 22 (12), 757-773, 2021	1079	2021
New SARS-CoV-2 variants—clinical, public health, and vaccine implications SS Abdool Karim, T de Oliveira New England Journal of Medicine 384 (19), 1866-1868, 2021	798	2021
Efficacy of NVX-CoV2373 Covid-19 vaccine against the B. 1.351 variant V Shinde, S Bhikha, Z Hoosain, M Archary, Q Bhorat, L Fairlie, U Lalloo, ... New England Journal of Medicine 384 (20), 1899-1909, 2021	718	2021
Escape of SARS-CoV-2 501Y. V2 from neutralization by convalescent plasma S Cele, I Gazy, L Jackson, SH Hwa, H Tegally, G Lustig, J Giandhari, ... Nature 593 (7857), 142-146, 2021	690	2021
Renewing Felsenstein’s phylogenetic bootstrap in the era of big data F Lemoine, JB Domelevo Entfellner, E Wilkinson, D Correia, ... Nature 556 (7702), 452-456, 2018	608	2018
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022	601	2022
An automated genotyping system for analysis of HIV-1 and other microbial sequences T De Oliveira, K Deforche, S Cassol, M Salminen, D Paraskevis, ... Bioinformatics 21 (19), 3797-3800, 2005	596	2005
T cell responses to SARS-CoV-2 spike cross-recognize Omicron R Keeton, MB Tincho, A Ngomti, R Baguma, N Benede, A Suzuki, K Khan, ... Nature 603 (7901), 488-492, 2022	555	2022
HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression … RK Gupta, J Gregson, N Parkin, H Haile-Selassie, A Tanuri, LA Forero, ... The Lancet infectious diseases 18 (3), 346-355, 2018	448	2018
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infection, genetics and evolution 19, 337-348, 2013	418	2013
Sixteen novel lineages of SARS-CoV-2 in South Africa H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ... Nature medicine 27 (3), 440-446, 2021	375	2021
SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ... MedRxiv, 2021	369	2021
Genome Detective: an automated system for virus identification from high-throughput sequencing data M Vilsker, Y Moosa, S Nooij, V Fonseca, Y Ghysens, K Dumon, ... Bioinformatics 35 (5), 871-873, 2019	354	2019
Genomic and epidemiological monitoring of yellow fever virus transmission potential NR Faria, MUG Kraemer, SC Hill, J Góes de Jesus, RS Aguiar, FCM Iani, ... Science 361 (6405), 894-899, 2018	318	2018

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