Tobias K Karakach
Tobias K Karakach
Assistant Professor, Department of Pharmacology, Faculty of Medicine, Dalhousie University
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Single-cell transcriptome atlas of murine endothelial cells
J Kalucka, LPMH de Rooij, J Goveia, K Rohlenova, SJ Dumas, E Meta, ...
Cell 180 (4), 764-779. e20, 2020
An integrated gene expression landscape profiling approach to identify lung tumor endothelial cell heterogeneity and angiogenic candidates
J Goveia, K Rohlenova, F Taverna, L Treps, LC Conradi, A Pircher, ...
Cancer cell 37 (1), 21-36. e13, 2020
Single-cell RNA sequencing maps endothelial metabolic plasticity in pathological angiogenesis
K Rohlenova, J Goveia, M García-Caballero, A Subramanian, J Kalucka, ...
Cell metabolism 31 (4), 862-877. e14, 2020
International NMR-based environmental metabolomics intercomparison exercise
MR Viant, DW Bearden, JG Bundy, IW Burton, TW Collette, DR Ekman, ...
Environmental science & technology 43 (1), 219-225, 2009
Identification of genes differentially expressed in Atlantic salmon (Salmo salar) in response to infection by Aeromonas salmonicida using cDNA microarray technology
KV Ewart, JC Belanger, J Williams, T Karakach, S Penny, SCM Tsoi, ...
Developmental & Comparative Immunology 29 (4), 333-347, 2005
Single-cell RNA sequencing reveals renal endothelium heterogeneity and metabolic adaptation to water deprivation
SJ Dumas, E Meta, M Borri, J Goveia, K Rohlenova, NV Conchinha, ...
Journal of the American Society of Nephrology 31 (1), 118-138, 2020
Multivariate curve resolution of time course microarray data
PD Wentzell, TK Karakach, S Roy, MJ Martinez, CP Allen, ...
BMC bioinformatics 7, 1-19, 2006
Prebiotic effects of diet supplemented with the cultivated red seaweed Chondrus crispus or with fructo-oligo-saccharide on host immunity, colonic microbiota and …
J Liu, S Kandasamy, J Zhang, CW Kirby, T Karakach, J Hafting, ...
BMC complementary and alternative medicine 15, 1-12, 2015
An introduction to DNA microarrays for gene expression analysis
TK Karakach, RM Flight, SE Douglas, PD Wentzell
Chemometrics and Intelligent Laboratory Systems 104 (1), 28-52, 2010
EndoDB: a database of endothelial cell transcriptomics data
S Khan, F Taverna, K Rohlenova, L Treps, V Geldhof, L de Rooij, L Sokol, ...
Nucleic acids research 47 (D1), D736-D744, 2019
1H-NMR and mass spectrometric characterization of the metabolic response of juvenile Atlantic salmon (Salmo salar) to long-term handling stress
TK Karakach, EC Huenupi, EC Soo, JA Walter, LOB Afonso
Metabolomics 5, 123-137, 2009
Tumor vessel co-option probed by single-cell analysis
LA Teuwen, LPMH De Rooij, A Cuypers, K Rohlenova, SJ Dumas, ...
Cell reports 35 (11), 2021
Pre-symptomatic activation of antioxidant responses and alterations in glucose and pyruvate metabolism in Niemann-Pick Type C1-deficient murine brain
BE Kennedy, VG LeBlanc, TM Mailman, D Fice, I Burton, TK Karakach, ...
PloS one 8 (12), e82685, 2013
Characterization of the measurement error structure in 1D 1H NMR data for metabolomics studies
TK Karakach, PD Wentzell, JA Walter
Analytica Chimica Acta 636 (2), 163-174, 2009
BIOMEX: an interactive workflow for (single cell) omics data interpretation and visualization
F Taverna, J Goveia, TK Karakach, S Khan, K Rohlenova, L Treps, ...
Nucleic acids research 48 (W1), W385-W394, 2020
Dereplication, Residual Complexity, and Rational Naming: The Case of the Actaea Triterpenes
F Qiu, A Imai, JB McAlpine, DC Lankin, I Burton, T Karakach, ...
Journal of natural products 75 (3), 432-443, 2012
NMR metabolic analysis of samples using fuzzy K‐means clustering
M Čuperlović‐Culf, N Belacel, AS Culf, IC Chute, RJ Ouellette, IW Burton, ...
Magnetic Resonance in Chemistry 47 (S1), S96-S104, 2009
Integrator restrains paraspeckles assembly by promoting isoform switching of the lncRNA NEAT1
J Barra, GS Gaidosh, E Blumenthal, F Beckedorff, MM Tayari, N Kirstein, ...
Science advances 6 (27), eaaz9072, 2020
2D NMR Barcoding and Differential Analysis of Complex Mixtures for Chemical Identification: The Actaea Triterpenes
F Qiu, JB McAlpine, DC Lankin, I Burton, T Karakach, SN Chen, GF Pauli
Analytical chemistry 86 (8), 3964-3972, 2014
Molecular characterization of zebrafish embryogenesis via DNA microarrays and multiplatform time course metabolomics studies
KH Soanes, JC Achenbach, IW Burton, JPM Hui, SL Penny, TK Karakach
Journal of Proteome Research 10 (11), 5102-5117, 2011
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