Drena Dobbs

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Vasant G HonavarDorothy Foehr Huck and J. Lloyd Huck Chair in Biomedical Data Sciences and Artificial IntelligenceVerified email at psu.edu
Yasser EL-ManzalawyGeisinger Health SystemVerified email at geisinger.edu
Changhui YanAssociate Professor, Department of Computer Science, North Dakota State UniversityVerified email at ndsu.edu
Carson AndorfComputational Biologist, USDA-ARSVerified email at iastate.edu
Cornelia CarageaUniversity of Illinois at ChicagoVerified email at uic.edu
Li C XueRadboud University Medical CenterVerified email at radboudumc.nl
Usha MuppiralaAssociate Scientist, Genome informatics Facility, Iowa State UniversityVerified email at iastate.edu
Rasna R. WaliaCorteva AgriscienceVerified email at corteva.com
Peter ZabackVerified email at iastate.edu
Jivko SinapovAssistant Professor, Tufts UniversityVerified email at cs.tufts.edu
Fadi TowficPrometheus BiosciencesVerified email at prometheusbiosciences.com
Doina CarageaKansas State UniversityVerified email at ksu.edu
Alexandre M.J.J. BonvinUtrecht universityVerified email at uu.nl
Randall PetersonUniversity of UtahVerified email at pharm.utah.edu
Jie BaoMemectVerified email at memect.co
Andrzej KloczkowskiProfessor of Pediatrics, The Ohio State University, Institute for Genomic Medicine, NCHVerified email at osu.edu
Thomas PetersonProfessor of Genetics, Development and Cell Biology, and Professor of Agronomy, Iowa State UniversityVerified email at iastate.edu
Diane SchroederUC DavisVerified email at ucdavis.edu
Taner SenResearch Scientist, USDA-ARS, GrainGenes / Adj. Prof., UC BerkeleyVerified email at usda.gov
Hank W. Bass, Ph.D.Professor of Biological Science, Florida State UniversityVerified email at bio.fsu.edu

Drena Dobbs

University Professor, Emerita, Genetics, Development & Cell Biology, Iowa State University

Verified email at iastate.edu - Homepage

Macromolecular recognition RNA-protein interactions EIAV Rev-RRE ZFN design Bioinformatics


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Rapid “open-source” engineering of customized zinc-finger nucleases for highly efficient gene modification ML Maeder, S Thibodeau-Beganny, A Osiak, DA Wright, RM Anthony, ... Molecular cell 31 (2), 294-301, 2008	996	2008
Predicting linear B‐cell epitopes using string kernels Y EL‐Manzalawy, D Dobbs, V Honavar Journal of Molecular Recognition: An Interdisciplinary Journal 21 (4), 243-255, 2008	831	2008
Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA) JD Sander, EJ Dahlborg, MJ Goodwin, L Cade, F Zhang, D Cifuentes, ... Nature methods 8 (1), 67-69, 2011	815	2011
Predicting RNA-protein interactions using only sequence information UK Muppirala, VG Honavar, D Dobbs BMC bioinformatics 12, 1-11, 2011	491	2011
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases F Zhang, ML Maeder, E Unger-Wallace, JP Hoshaw, D Reyon, ... Proceedings of the National Academy of Sciences 107 (26), 12028-12033, 2010	486	2010
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool JD Sander, ML Maeder, D Reyon, DF Voytas, JK Joung, D Dobbs Nucleic acids research 38 (suppl_2), W462-W468, 2010	433	2010
Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases SJ Curtin, F Zhang, JD Sander, WJ Haun, C Starker, NJ Baltes, D Reyon, ... Plant physiology 156 (2), 466-473, 2011	396	2011
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool JD Sander, P Zaback, JK Joung, DF Voytas, D Dobbs Nucleic acids research 35 (suppl_2), W599-W605, 2007	367	2007
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly DA Wright, S Thibodeau-Beganny, JD Sander, RJ Winfrey, AS Hirsh, ... Nature protocols 1 (3), 1637-1652, 2006	260	2006
Predicting flexible length linear B-cell epitopes Y El-Manzalawy, D Dobbs, V Honavar Computational Systems Bioinformatics: (Volume 7), 121-132, 2008	258	2008
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins M Terribilini, JD Sander, JH Lee, P Zaback, RL Jernigan, V Honavar, ... Nucleic acids research 35 (suppl_2), W578-W584, 2007	227	2007
Characterization of protein–protein interfaces C Yan, F Wu, RL Jernigan, D Dobbs, V Honavar The protein journal 27, 59-70, 2008	221	2008
Glycosylation site prediction using ensembles of Support Vector Machine classifiers C Caragea, J Sinapov, A Silvescu, D Dobbs, V Honavar BMC bioinformatics 8, 1-13, 2007	220	2007
Prediction of RNA binding sites in proteins from amino acid sequence M Terribilini, JH Lee, C Yan, RL Jernigan, V Honavar, D Dobbs RNA 12 (8), 1450-1462, 2006	218	2006
A two-stage classifier for identification of protein–protein interface residues C Yan, D Dobbs, V Honavar Bioinformatics 20 (suppl_1), i371-i378, 2004	201	2004
Computational prediction of protein interfaces: A review of data driven methods LC Xue, D Dobbs, AMJJ Bonvin, V Honavar FEBS letters 589 (23), 3516-3526, 2015	190	2015
Predicting DNA-binding sites of proteins from amino acid sequence C Yan, M Terribilini, F Wu, RL Jernigan, D Dobbs, V Honavar BMC bioinformatics 7, 1-10, 2006	179	2006
5′ flanking sequence signals are required for activity of silkworm alanine tRNA genes in homologous in vitro transcription systems KU Sprague, D Larson, D Morton Cell 22 (1), 171-178, 1980	176	1980
Dynamics of telomere length variation in Tetrahymena thermophila DD Larson, EA Spangler, EH Blackburn Cell 50 (3), 477-483, 1987	161	1987
PRIDB: a protein–RNA interface database BA Lewis, RR Walia, M Terribilini, J Ferguson, C Zheng, V Honavar, ... Nucleic acids research 39 (suppl_1), D277-D282, 2010	152	2010

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