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Joshua Welch
Joshua Welch
Associate Professor, University of Michigan
Verified email at umich.edu - Homepage
Title
Cited by
Cited by
Year
Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
SG Rodriques, RR Stickels, A Goeva, CA Martin, E Murray, ...
Science 363 (6434), 1463-1467, 2019
15892019
Single-cell multi-omic integration compares and contrasts features of brain cell identity
JD Welch, V Kozareva, A Ferreira, C Vanderburg, C Martin, EZ Macosko
Cell 177 (7), 1873-1887. e17, 2019
9032019
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
2642021
Single-cell transcriptomics reconstructs fate conversion from fibroblast to cardiomyocyte
Z Liu, L Wang, JD Welch, H Ma, Y Zhou, HR Vaseghi, S Yu, JB Wall, ...
Nature 551 (7678), 100-104, 2017
2092017
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ...
Nature 598 (7879), 103-110, 2021
1942021
A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration
Y Matsushita, M Nagata, KM Kozloff, JD Welch, K Mizuhashi, ...
Nature communications 11 (1), 332, 2020
1942020
SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data
JD Welch, AJ Hartemink, JF Prins
Genome biology 17, 1-15, 2016
1872016
MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics
JD Welch, AJ Hartemink, JF Prins
Genome biology 18, 1-19, 2017
1522017
Jointly defining cell types from multiple single-cell datasets using LIGER
J Liu, C Gao, J Sodicoff, V Kozareva, EZ Macosko, JD Welch
Nature protocols 15 (11), 3632-3662, 2020
1062020
Single-cell transcriptomic analyses of cell fate transitions during human cardiac reprogramming
Y Zhou, Z Liu, JD Welch, X Gao, L Wang, T Garbutt, B Keepers, H Ma, ...
Cell stem cell 25 (1), 149-164. e9, 2019
1032019
A subset of replication-dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues
SM Lyons, CH Cunningham, JD Welch, B Groh, AY Guo, B Wei, ...
Nucleic acids research 44 (19), 9190-9205, 2016
642016
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ...
Biorxiv, 2020.02. 29.970558, 2020
622020
Iterative single-cell multi-omic integration using online learning
C Gao, J Liu, AR Kriebel, S Preissl, C Luo, R Castanon, J Sandoval, ...
Nature biotechnology 39 (8), 1000-1007, 2021
612021
Deep sequencing shows multiple oligouridylations are required for 3′ to 5′ degradation of histone mRNAs on polyribosomes
MK Slevin, S Meaux, JD Welch, R Bigler, PLM de Marval, W Su, ...
Molecular cell 53 (6), 1020-1030, 2014
602014
Robust detection of alternative splicing in a population of single cells
JD Welch, Y Hu, JF Prins
Nucleic acids research 44 (8), e73-e73, 2016
572016
G-CSF secreted by mutant IDH1 glioma stem cells abolishes myeloid cell immunosuppression and enhances the efficacy of immunotherapy
MS Alghamri, BL McClellan, RP Avvari, R Thalla, S Carney, CS Hartlage, ...
Science Advances 7 (40), eabh3243, 2021
542021
TUT7 catalyzes the uridylation of the 3′ end for rapid degradation of histone mRNA
PE Lackey, JD Welch, WF Marzluff
Rna 22 (11), 1673-1688, 2016
522016
Pseudogenes transcribed in breast invasive carcinoma show subtype-specific expression and ceRNA potential
JD Welch, J Baran-Gale, CM Perou, P Sethupathy, JF Prins
BMC genomics 16, 1-16, 2015
502015
UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization
AR Kriebel, JD Welch
Nature communications 13 (1), 780, 2022
462022
SquiggleNet: real-time, direct classification of nanopore signals
Y Bao, J Wadden, JR Erb-Downward, P Ranjan, W Zhou, TL McDonald, ...
Genome biology 22, 1-16, 2021
432021
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