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Rian Pierneef
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A reservoir of ‘historical’ antibiotic resistance genes in remote pristine Antarctic soils
MW Van Goethem, R Pierneef, OKI Bezuidt, Y Van De Peer, DA Cowan, ...
Microbiome 6 (1), 40, 2018
2942018
Mainstreams of Horizontal Gene Exchange in Enterobacteria: Consideration of the Outbreak of Enterohemorrhagic E. coli O104:H4 in Germany in 2011
O Bezuidt, R Pierneef, K Mncube, G Lima-Mendez, ON Reva
PLoS One 6 (10), e25702, 2011
432011
The Geobacillus Pan-Genome: Implications for the Evolution of the Genus
OK Bezuidt, R Pierneef, AM Gomri, F Adesioye, TP Makhalanyane, ...
Frontiers in microbiology 7, 723, 2016
342016
Runs of homozygosity analysis of South African sheep breeds from various production systems investigated using OvineSNP50k data
EF Dzomba, M Chimonyo, R Pierneef, FC Muchadeyi
BMC genomics 22 (1), 1-14, 2021
312021
Microbial communities of meat and meat products: An exploratory analysis of the product quality and safety at selected enterprises in South Africa
E Madoroba, K Magwedere, NS Chaora, I Matle, F Muchadeyi, ...
Microorganisms 9 (3), 507, 2021
26*2021
Whole genome-based characterization of Listeria monocytogenes isolates recovered from the food chain in South Africa
T Mafuna, I Matle, K Magwedere, RE Pierneef, ON Reva
Frontiers in Microbiology 12, 669287, 2021
242021
Resistance Sniffer: An online tool for prediction of drug resistance patterns of Mycobacterium tuberculosis isolates using next generation sequencing data
D Muzondiwa, A Mutshembele, RE Pierneef, ON Reva
International Journal of Medical Microbiology 310 (2), 151399, 2020
232020
Differences in precipitation regime shape microbial community composition and functional potential in Namib Desert soils
Y Naidoo, A Valverde, RE Pierneef, DA Cowan
Microbial ecology 83 (3), 689-701, 2022
222022
Pre_GI: a global map of ontological links between horizontally transferred genomic islands in bacterial and archaeal genomes
R Pierneef, L Cronje, O Bezuidt, ON Reva
Database 2015, bav058, 2015
202015
Pathogen infection influences a distinct microbial community composition in sorghum RILs
K Masenya, GD Thompson, M Tekere, TP Makhalanyane, RE Pierneef, ...
Plant and Soil 463, 555-572, 2021
192021
Phages actively challenge niche communities in Antarctic soils
OKI Bezuidt, PH Lebre, R Pierneef, C León-Sobrino, EM Adriaenssens, ...
Msystems 5 (3), 10.1128/msystems. 00234-20, 2020
192020
Bacterial profiling of Haemonchus contortus gut microbiome infecting Dohne Merino sheep in South Africa
T Mafuna, P Soma, AM Tsotetsi-Khambule, CA Hefer, FC Muchadeyi, ...
Scientific reports 11 (1), 5905, 2021
182021
Population Structure of Non-ST6 Listeria monocytogenes Isolated in the Red Meat and Poultry Value Chain in South Africa
I Matle, T Mafuna, E Madoroba, KR Mbatha, K Magwedere, R Pierneef
Microorganisms 8 (8), 1152, 2020
172020
Q Fever: Seroprevalence, Risk Factors in Slaughter Livestock and Genotypes of Coxiella burnetii in South Africa
M Mangena, N Gcebe, R Pierneef, PN Thompson, AA Adesiyun
Pathogens 10 (3), 258, 2021
142021
A clinically important, plasmid-borne antibiotic resistance gene (β-lactamase TEM-116) present in desert soils
Y Naidoo, A Valverde, ED Cason, RE Pierneef, DA Cowan
Science of The Total Environment 719, 137497, 2020
132020
A 16S next generation sequencing based molecular and bioinformatics pipeline to identify processed meat products contamination and mislabelling
NS Chaora, KS Khanyile, K Magwedere, R Pierneef, FT Tabit, ...
Animals 12 (4), 416, 2022
122022
Genomic Characterization of Endemic and Ecdemic Non-typhoidal Salmonella enterica Lineages Circulating Among Animals and Animal Products in South Africa
LM Carroll, R Pierneef, M Mathole, I Matle
Frontiers in Microbiology 12, 748611, 2021
122021
De novo Assembly of Transcriptomes From a B73 Maize Line Introgressed With a QTL for Resistance to Gray Leaf Spot Disease Reveals a Candidate Allele of a …
T Welgemoed, R Pierneef, L Sterck, Y Van de Peer, V Swart, ...
Frontiers in plant science 11, 191, 2020
102020
Molecular Characterization of Salmonella Detected along the Broiler Production Chain in Trinidad and Tobago
AS Khan, RE Pierneef, N Gonzalez-Escalona, M Maguire, C Li, GH Tyson, ...
Microorganisms 10 (3), 570, 2022
92022
Draft genome sequences of Pantoea agglomerans strains BD1274 and BD1212, isolated from onion seeds, reveal major differences in pathogenicity and functional genes
VM Moloto, T Goszczynska, AI Hassen, R Pierneef, T Coutinho
Microbiology Resource Announcements 9 (45), 10.1128/mra. 01507-19, 2020
92020
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Articles 1–20