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Rian Pierneef
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A reservoir of ‘historical’ antibiotic resistance genes in remote pristine Antarctic soils
MW Van Goethem, R Pierneef, OKI Bezuidt, Y Van De Peer, DA Cowan, ...
Microbiome 6 (1), 40, 2018
3152018
Mainstreams of Horizontal Gene Exchange in Enterobacteria: Consideration of the Outbreak of Enterohemorrhagic E. coli O104:H4 in Germany in 2011
O Bezuidt, R Pierneef, K Mncube, G Lima-Mendez, ON Reva
PLoS One 6 (10), e25702, 2011
442011
Runs of homozygosity analysis of South African sheep breeds from various production systems investigated using OvineSNP50k data
EF Dzomba, M Chimonyo, R Pierneef, FC Muchadeyi
BMC genomics 22, 1-14, 2021
342021
The Geobacillus Pan-Genome: Implications for the Evolution of the Genus
OK Bezuidt, R Pierneef, AM Gomri, F Adesioye, TP Makhalanyane, ...
Frontiers in microbiology 7, 723, 2016
342016
Whole Genome-Based Characterization of Listeria monocytogenes Isolates Recovered From the Food Chain in South Africa
T Mafuna, I Matle, K Magwedere, RE Pierneef, ON Reva
Frontiers in Microbiology 12, 669287, 2021
312021
Microbial communities of meat and meat products: An exploratory analysis of the product quality and safety at selected enterprises in South Africa
E Madoroba, K Magwedere, NS Chaora, I Matle, F Muchadeyi, ...
Microorganisms 9 (3), 507, 2021
302021
Differences in precipitation regime shape microbial community composition and functional potential in Namib Desert soils
Y Naidoo, A Valverde, RE Pierneef, DA Cowan
Microbial ecology 83 (3), 689-701, 2022
252022
Resistance Sniffer: An online tool for prediction of drug resistance patterns of Mycobacterium tuberculosis isolates using next generation sequencing data
D Muzondiwa, A Mutshembele, RE Pierneef, ON Reva
International Journal of Medical Microbiology 310 (2), 151399, 2020
252020
Population Structure of Non-ST6 Listeria monocytogenes Isolated in the Red Meat and Poultry Value Chain in South Africa
I Matle, T Mafuna, E Madoroba, KR Mbatha, K Magwedere, R Pierneef
Microorganisms 8 (8), 1152, 2020
232020
Phages actively challenge niche communities in Antarctic soils
OKI Bezuidt, PH Lebre, R Pierneef, C León-Sobrino, EM Adriaenssens, ...
Msystems 5 (3), 10.1128/msystems. 00234-20, 2020
222020
Pre_GI: a global map of ontological links between horizontally transferred genomic islands in bacterial and archaeal genomes
R Pierneef, L Cronje, O Bezuidt, ON Reva
Database 2015, bav058, 2015
212015
Pathogen infection influences a distinct microbial community composition in sorghum RILs
K Masenya, GD Thompson, M Tekere, TP Makhalanyane, RE Pierneef, ...
Plant and Soil 463, 555-572, 2021
192021
Bacterial profiling of Haemonchus contortus gut microbiome infecting Dohne Merino sheep in South Africa
T Mafuna, P Soma, AM Tsotetsi-Khambule, CA Hefer, FC Muchadeyi, ...
Scientific reports 11 (1), 5905, 2021
182021
Q Fever: Seroprevalence, Risk Factors in Slaughter Livestock and Genotypes of Coxiella burnetii in South Africa
M Mangena, N Gcebe, R Pierneef, PN Thompson, AA Adesiyun
Pathogens 10 (3), 258, 2021
162021
A clinically important, plasmid-borne antibiotic resistance gene (β-lactamase TEM-116) present in desert soils
Y Naidoo, A Valverde, ED Cason, RE Pierneef, DA Cowan
Science of The Total Environment 719, 137497, 2020
152020
A 16S next generation sequencing based molecular and bioinformatics pipeline to identify processed meat products contamination and mislabelling
NS Chaora, KS Khanyile, K Magwedere, R Pierneef, FT Tabit, ...
Animals 12 (4), 416, 2022
132022
Genomic Diversity of Common Sequence Types of Listeria monocytogenes Isolated from Ready-to-Eat Products of Animal Origin in South Africa
I Matle, R Pierneef, KR Mbatha, K Magwedere, E Madoroba
Genes 10 (12), 1007, 2019
132019
African microbiomes matter
TP Makhalanyane, OKI Bezuidt, RE Pierneef, E Mizrachi, A Zeze, ...
Nature Reviews Microbiology 21 (8), 479-481, 2023
122023
Genomic Characterization of Endemic and Ecdemic Non-typhoidal Salmonella enterica Lineages Circulating Among Animals and Animal Products in South Africa
LM Carroll, R Pierneef, M Mathole, I Matle
Frontiers in Microbiology 12, 748611, 2021
122021
Comparative Genomics of Listeria Species Recovered from Meat and Food Processing Facilities
T Mafuna, I Matle, K Magwedere, RE Pierneef, ON Reva
Microbiology Spectrum 10 (5), e01189-22, 2022
112022
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