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Tharindu Senapathi
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ProtoCaller: robust automation of binding free energy calculations
M Suruzhon, T Senapathi, MS Bodnarchuk, R Viner, ID Wall, CB Barnett, ...
Journal of Chemical Information and Modeling 60 (4), 1917-1921, 2020
212020
Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
S Bray, T Senapathi, C Barnett, B Grüning
Journal of Cheminformatics 12 (1), 54, 2020
182020
Biomolecular reaction and interaction dynamics global environment (BRIDGE)
T Senapathi, S Bray, CB Barnett, B Grüning, KJ Naidoo
Bioinformatics 35 (18), 3508-3509, 2019
162019
Rice bran nanofiber composites for stabilization of phytase
UA Rathnayake, T Senapathi, C Sandaruwan, S Gunawardene, ...
Chemistry Central Journal 12, 1-7, 2018
162018
BRIDGE: an open platform for reproducible high-throughput free energy simulations
T Senapathi, M Suruzhon, CB Barnett, J Essex, KJ Naidoo
Journal of Chemical Information and Modeling 60 (11), 5290-5295, 2020
122020
Multidimensional free energy and accelerated quantum library methods provide a gateway to glycoenzyme conformational, electronic, and reaction mechanisms
KJ Naidoo, T Bruce-Chwatt, T Senapathi, M Hillebrand
Accounts of Chemical Research 54 (22), 4120-4130, 2021
62021
Comparative ligand structural analytics illustrated on variably glycosylated MUC1 antigen–antibody binding
CB Barnett, T Senapathi, KJ Naidoo
Beilstein Journal of Organic Chemistry 16 (1), 2540-2550, 2020
42020
High Throughput Molecular Dynamics and Analysis
S Bray, T Senapathi, C Barnett, B Grüning
Galaxy Training Network, 2024
12024
BRIDGE: an open platform for reproducible protein-ligand simulations and free energy of binding calculations
T Senapathi, CB Barnett, KJ Naidoo
Bio-protocol 10 (17), e3731-e3731, 2020
12020
Enzyme Reaction Dynamics From Adaptive Reaction Coordinate Forces
KJ Naidoo, T Bruce-Chwatt, T Senapathi
Elsevier, 2024
2024
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Articles 1–10