| Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ... Nature 499 (7456), 74-78, 2013 | 1028 | 2013 |
| Genome-wide evidence reveals that African and Eurasian golden jackals are distinct species KP Koepfli, J Pollinger, R Godinho, J Robinson, A Lea, S Hendricks, ... Current biology 25 (16), 2158-2165, 2015 | 230 | 2015 |
| Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf BM vonHoldt, JA Cahill, Z Fan, I Gronau, J Robinson, JP Pollinger, ... Science Advances 2 (7), e1501714, 2016 | 210 | 2016 |
| Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution JA Cahill, RE Green, TL Fulton, M Stiller, F Jay, N Ovsyanikov, ... PLoS genetics 9 (3), e1003345, 2013 | 196 | 2013 |
| Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers A Benazzo, E Trucchi, JA Cahill, P Maisano Delser, S Mona, M Fumagalli, ... Proceedings of the National Academy of Sciences 114 (45), E9589-E9597, 2017 | 151 | 2017 |
| Genomic evidence of geographically widespread effect of gene flow from polar bears into brown bears JA Cahill, I Stirling, L Kistler, R Salamzade, E Ersmark, TL Fulton, M Stiller, ... Molecular ecology 24 (6), 1205-1217, 2015 | 147 | 2015 |
| Natural selection shaped the rise and fall of passenger pigeon genomic diversity GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ... Science 358 (6365), 951-954, 2017 | 140 | 2017 |
| Partial genomic survival of cave bears in living brown bears A Barlow, JA Cahill, S Hartmann, C Theunert, G Xenikoudakis, GG Fortes, ... Nature ecology & evolution 2 (10), 1563-1570, 2018 | 130 | 2018 |
| Puma genomes from North and South America provide insights into the genomic consequences of inbreeding NF Saremi, MA Supple, A Byrne, JA Cahill, LL Coutinho, L Dalén, ... Nature communications 10 (1), 4769, 2019 | 105 | 2019 |
| Universal nomenclature for oxytocin–vasotocin ligand and receptor families C Theofanopoulou, G Gedman, JA Cahill, C Boeckx, ED Jarvis Nature 592 (7856), 747-755, 2021 | 100 | 2021 |
| Hybridization in human evolution: Insights from other organisms RR Ackermann, ML Arnold, MD Baiz, JA Cahill, L Cortés‐Ortiz, BJ Evans, ... Evolutionary Anthropology: Issues, News, and Reviews 28 (4), 189-209, 2019 | 89 | 2019 |
| Genomic Data from Extinct North American Camelops Revise Camel Evolutionary History PD Heintzman, GD Zazula, JA Cahill, AV Reyes, RDE MacPhee, ... Molecular Biology and Evolution 32 (9), 2433-2440, 2015 | 78 | 2015 |
| A new genus of horse from Pleistocene North America PD Heintzman, GD Zazula, RDE MacPhee, E Scott, JA Cahill, ... Elife 6, e29944, 2017 | 75 | 2017 |
| Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data JA Cahill, AER Soares, RE Green, B Shapiro Philosophical Transactions of the Royal Society B: Biological Sciences 371 …, 2016 | 73 | 2016 |
| Genomic evidence of widespread admixture from polar bears into brown bears during the last ice age JA Cahill, PD Heintzman, K Harris, MD Teasdale, J Kapp, AER Soares, ... Molecular Biology and Evolution 35 (5), 1120-1129, 2018 | 70 | 2018 |
| Environmental genomics of Late Pleistocene black bears and giant short-faced bears MW Pedersen, B De Sanctis, NF Saremi, M Sikora, EE Puckett, Z Gu, ... Current Biology 31 (12), 2728-2736. e8, 2021 | 56 | 2021 |
| Complex admixture preceded and followed the extinction of wisent in the wild K Węcek, S Hartmann, JLA Paijmans, U Taron, G Xenikoudakis, JA Cahill, ... Molecular biology and evolution 34 (3), 598-612, 2017 | 53 | 2017 |
| Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling MS Creamer, EC Stites, M Aziz, JA Cahill, CW Tan, ME Berens, H Han, ... BMC systems biology 6, 1-14, 2012 | 49 | 2012 |
| African and Asian leopards are highly differentiated at the genomic level JLA Paijmans, A Barlow, MS Becker, JA Cahill, J Fickel, DWG Förster, ... Current Biology 31 (9), 1872-1882. e5, 2021 | 35 | 2021 |
| Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans JA Cahill, J Armstrong, A Deran, CJ Khoury, B Paten, D Haussler, ... Genome Research 31 (11), 2035-2049, 2021 | 32 | 2021 |
Beth ShapiroUC Santa Cruz Genomics Institute; Ecology and Evolutionary Biology, UC Santa CruzVerified email at ucsc.edu
