| Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology IW Deveson, B Gong, K Lai, JS LoCoco, TA Richmond, J Schageman, ... Nature biotechnology 39 (9), 1115-1128, 2021 | 148 | 2021 |
| Dimension reduction and clustering models for single-cell RNA sequencing data: a comparative study C Feng, S Liu, H Zhang, R Guan, D Li, F Zhou, Y Liang, X Feng International journal of molecular sciences 21 (6), 2181, 2020 | 52 | 2020 |
| A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency W Jones, B Gong, N Novoradovskaya, D Li, R Kusko, TA Richmond, ... Genome biology 22, 1-38, 2021 | 30 | 2021 |
| Identification and characterization of conserved lncRNAs in human and rat brain D Li, MQ Yang BMC bioinformatics 18, 31-38, 2017 | 29 | 2017 |
| Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature D Li, W Yang, Y Zhang, JY Yang, R Guan, D Xu, MQ Yang BMC medical genomics 11, 89-97, 2018 | 25 | 2018 |
| Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions B Gong, D Li, R Kusko, N Novoradovskaya, Y Zhang, S Wang, ... Genome biology 22, 1-23, 2021 | 21 | 2021 |
| Toward the precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis Y Zhang, W Yang, D Li, JY Yang, R Guan, MQ Yang BMC medical genomics 11, 99-107, 2018 | 18 | 2018 |
| Transcription factor and lncRNA regulatory networks identify key elements in lung adenocarcinoma D Li, W Yang, J Zhang, JY Yang, R Guan, MQ Yang Genes 9 (1), 12, 2018 | 12 | 2018 |
| A gene module-based eQTL analysis prioritizing disease genes and pathways in kidney cancer MQ Yang, D Li, W Yang, Y Zhang, J Liu, W Tong Computational and Structural Biotechnology Journal 15, 463-470, 2017 | 12 | 2017 |
| Gene regulation analysis reveals perturbations of autism spectrum disorder during neural system development D Li, J Xu, MQ Yang Genes 12 (12), 1901, 2021 | 7 | 2021 |
| Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples Y Zhang, TM Blomquist, R Kusko, D Stetson, Z Zhang, L Yin, R Sebra, ... Genome Biology 23 (1), 141, 2022 | 6 | 2022 |
| Linking pharmacogenomic information on drug safety and efficacy with ethnic minority populations D Li, AH Xie, Z Liu, D Li, B Ning, S Thakkar, W Tong, J Xu Pharmaceutics 12 (11), 1021, 2020 | 5 | 2020 |
| FDA-led consortium studies advance quality control of targeted next generation sequencing assays for precision oncology D Li, R Kusko, B Ning, W Tong, DJ Johann Jr, J Xu Precision cancer medicine 4, 2021 | 4 | 2021 |
| Systems biology analysis reveals new insights into invasive lung cancer D Li, W Yang, C Arthur, JS Liu, C Cruz-Niera, MQ Yang BMC Systems Biology 12, 47-53, 2018 | 4 | 2018 |
| Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression D Li, W Yang, Y Zhang, JY Yang, W Tong, R Guan, MQ Yang 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 4 | 2017 |
| Effect of an obesogenic high-fat and high-sucrose diet on hepatic gene expression signatures in male Collaborative Cross mice VP Tryndyak, RA Willett, SK Nagumalli, D Li, MI Avigan, FA Beland, ... American Journal of Physiology-Gastrointestinal and Liver Physiology 324 (3 …, 2023 | 2 | 2023 |
| Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project B Gong, D Li, Y Zhang, R Kusko, S Lababidi, Z Cao, M Chen, N Chen, ... Scientific Reports 14 (1), 7028, 2024 | 1 | 2024 |
| Assessments of tumor mutational burden estimation by targeted panel sequencing: A comprehensive simulation analysis D Li, D Wang, DJ Johann Jr, H Hong, J Xu Experimental Biology and Medicine 248 (21), 1918-1926, 2023 | 1 | 2023 |
| Single-cell RNA-sequencing and subcellular spatial transcriptomics facilitate the translation of liver microphysiological systems for regulatory application D Li, Z Fang, Q Shi, N Zhang, B Gong, W Tong, AF Coskun, J Xu Journal of Pharmaceutical Analysis 13 (7), 691, 2023 | 1 | 2023 |
| Secure Privacy Preserving across Personal Health Data and Single Cell Genomics Research INSPIRE Academic Pedagogy—Merging Big Data Multiplatform with Deep Learning MQ Yang, S Yu, C Cruz-Neira, W Yang, ME Tudoreanu, D Li, Y Zhang, ... 2017 International Conference on Computational Science and Computational …, 2017 | 1 | 2017 |
