Francesco Asnicar
Francesco Asnicar
Department CIBIO, University of Trento
Verified email at unitn.it
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
3997*2019
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
5602019
Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome
P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ...
Cell host & microbe 24 (1), 133-145. e5, 2018
4362018
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
F Asnicar, G Weingart, TL Tickle, C Huttenhower, N Segata
PeerJ 3, e1029, 2015
424*2015
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
2662019
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ...
Nature methods 13 (5), 435-438, 2016
2662016
Strain-level analysis of mother-to-child bacterial transmission during the first few months of life
M Yassour, E Jason, LJ Hogstrom, TD Arthur, S Tripathi, H Siljander, ...
Cell host & microbe 24 (1), 146-154. e4, 2018
1752018
Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling
F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferretti, ...
MSystems 2 (1), e00164-16, 2017
1662017
The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell host & microbe 26 (5), 666-679. e7, 2019
1262019
Human postprandial responses to food and potential for precision nutrition
SE Berry, AM Valdes, DA Drew, F Asnicar, M Mazidi, J Wolf, J Capdevila, ...
Nature medicine 26 (6), 964-973, 2020
1182020
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ...
NPJ biofilms and microbiomes 3 (1), 1-12, 2017
1122017
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 1-14, 2019
752019
Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth
E Zagato, C Pozzi, A Bertocchi, T Schioppa, F Saccheri, S Guglietta, ...
Nature microbiology 5 (3), 511-524, 2020
722020
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ...
Nature Medicine 27 (2), 321-332, 2021
712021
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 1-10, 2020
672020
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science
E Boylen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints 6, e27295v2, 2018
502018
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
C Donati, M Zolfo, D Albanese, DT Truong, F Asnicar, V Iebba, D Cavalieri, ...
Nature microbiology 1 (7), 1-9, 2016
502016
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
Elife 10, e65088, 2021
462021
Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital
S Manara, E Pasolli, D Dolce, N Ravenni, S Campana, F Armanini, ...
Genome medicine 10 (1), 1-19, 2018
382018
Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform
E Dassi, A Ballarini, G Covello, A Quattrone, O Jousson, V De Sanctis, ...
Journal of biotechnology 190, 30-39, 2014
362014
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