Amanda Stahlke
Amanda Stahlke
Computational Biologist Postdoc, USDA-ARS
Verified email at - Homepage
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Large‐effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer
MJ Margres, ME Jones, B Epstein, DH Kerlin, S Comte, S Fox, AK Fraik, ...
Molecular ecology 27 (21), 4189-4199, 2018
Contemporary demographic reconstruction methods are robust to genome assembly quality: A case study in Tasmanian devils
AH Patton, MJ Margres, AR Stahlke, S Hendricks, K Lewallen, ...
Molecular biology and evolution 36 (12), 2906-2921, 2019
Cryptic patterns of speciation in cryptic primates: microendemic mouse lemurs and the multispecies coalescent
JW Poelstra, J Salmona, GP Tiley, D SchŁŖler, MB Blanco, ...
Systematic Biology 70 (2), 203-218, 2021
Tamarix dieback and vegetation patterns following release of the northern tamarisk beetle (Diorhabda carinulata) in western Colorado
D Kennard, N Louden, D Gemoets, S Ortega, E GonzŠlez, D Bean, ...
Biological Control 101, 114-122, 2016
The devil is in the details: Genomics of transmissible cancers in Tasmanian devils
A Storfer, PA Hohenlohe, MJ Margres, A Patton, AK Fraik, M Lawrance, ...
PLoS pathogens 14 (8), e1007098, 2018
Hybridization affects life-history traits and host specificity in Diorhabda spp.
EV Bitume, D Bean, AR Stahlke, RA Hufbauer
Biological Control 111, 45-52, 2017
Spontaneous Tumor Regression in Tasmanian Devils Associated with RASL11A Activation
MJ Margres, M Ruiz-Aravena, R Hamede, K Chawla, AH Patton, ...
Genetics 215 (4), 1143-1152, 2020
Disease swamps molecular signatures of genetic‐environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations
AK Fraik, MJ Margres, B Epstein, S Barbosa, M Jones, S Hendricks, ...
Evolution 74 (7), 1392-1408, 2020
Comparative landscape genetics reveals differential effects of environment on host and pathogen genetic structure in Tasmanian devils (Sarcophilus harrisii) and†…
CP Kozakiewicz, L Ricci, AH Patton, AR Stahlke, SA Hendricks, ...
Molecular Ecology 29 (17), 3217-3233, 2020
Population genomics training for the next generation of conservation geneticists: ConGen 2018 Workshop
A Stahlke, D Bell, T Dhendup, B Kern, S Pannoni, Z Robinson, J Strait, ...
Journal of Heredity 111 (2), 227-236, 2020
Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer
AR Stahlke, B Epstein, S Barbosa, MJ Margres, AH Patton, SA Hendricks, ...
Proceedings of the Royal Society B 288 (1951), 20210577, 2021
Population genomic structure in Goodman’s mouse lemur reveals long-standing separation of Madagascar’s Central Highlands and eastern rainforests
GP Tiley, MB Blanco, JM Ralison, RM Rasoloarison, AR Stahlke, ...
bioRxiv, 2020
Mitochondrial Genome Sequences of Diorhabda carinata and Diorhabda carinulata, Two Beetle Species Introduced to North America for Biological Control
AR Stahlke, AZ Ozsoy, DW Bean, P Hohenlohe
Microbiology Resource Announcements 8 (35), e00690-19, 2019
Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control
AR Stahlke, EV Bitume, ZA ÷zsoy, DW Bean, A Veillet, MI Clark, EI Clark, ...
Evolutionary applications 15 (1), 60-77, 2022
Cryptic patterns of speciation in cryptic primates: Microendemic mouse lemurs and the multispecies coalescent
D SchŁŖler, J Salmona, MB Blanco, J Poelstra, GP Tiley, ...
Scanning Electron Microsc Meet at, 2019
A chromosome-scale genome assembly of a Helicoverpa zea strain resistant to Bacillus thuringiensis Cry1Ac insecticidal protein
AR Stahlke, J Chang, LR Tembrock, SB Sim, S Chudalayandi, SM Geib, ...
Genome Biology and Evolution, 2022
A chromosome-scale genome assembly of a Bacillus thuringiensis Cry1Ac insecticidal protein resistant strain of Helicoverpa zea
AR Stahlke, J Chang, LR Tembrock, SB Sim, S Chudalayandi, SM Geib, ...
bioRxiv, 2022
polishCLR: a Nextflow workflow for polishing PacBio CLR genome assemblies
J Chang, AR Stahlke, S Chudalayandi, BD Rosen, AK Childers, A Severin
bioRxiv, 2022
Evolution of life history and dispersal traits during the range expansion of a biological control agent
E Clark, E Bitume, D Bean, A Stahlke, P Hohenlohe, R Hufbauer
Authorea Preprints, 2021
Genomics of Rapid Evolution in the Tasmanian Devil (Sarcophilus harrisii) and Tamarisk Beetles (Diorhabda Spp.), Wild Populations of Management Concern
AR Stahlke
University of Idaho, 2021
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