The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution International Peach Genome Initiative, I Verde, AG Abbott, S Scalabrin, ... Nature genetics 45 (5), 487-494, 2013 | 1195 | 2013 |
15 years of GDR: New data and functionality in the Genome Database for Rosaceae S Jung, T Lee, CH Cheng, K Buble, P Zheng, J Yu, J Humann, SP Ficklin, ... Nucleic acids research 47 (D1), D1137-D1145, 2019 | 371 | 2019 |
CottonGen: a genomics, genetics and breeding database for cotton research J Yu, S Jung, CH Cheng, SP Ficklin, T Lee, P Zheng, D Jones, RG Percy, ... Nucleic acids research 42 (D1), D1229-D1236, 2014 | 312 | 2014 |
Development and preliminary evaluation of a 90 K AxiomŽ SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa NV Bassil, TM Davis, H Zhang, S Ficklin, M Mittmann, T Webster, ... BMC genomics 16, 1-30, 2015 | 229 | 2015 |
The genome database for Rosaceae (GDR): year 10 update S Jung, SP Ficklin, T Lee, CH Cheng, A Blenda, P Zheng, J Yu, ... Nucleic acids research 42 (D1), D1237-D1244, 2014 | 209 | 2014 |
CMD: a Cotton Microsatellite Database resource for Gossypium genomics A Blenda, J Scheffler, B Scheffler, M Palmer, JM Lacape, JZ Yu, ... BMC genomics 7, 1-10, 2006 | 167 | 2006 |
Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms Y Wang, X Wang, H Tang, X Tan, SP Ficklin, FA Feltus, AH Paterson PloS one 6 (12), e28150, 2011 | 164 | 2011 |
Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice SP Ficklin, FA Feltus Plant Physiology 156 (3), 1244-1256, 2011 | 160 | 2011 |
Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry C Peace, N Bassil, D Main, S Ficklin, UR Rosyara, T Stegmeir, A Sebolt, ... PLoS One 7 (12), e48305, 2012 | 151 | 2012 |
GDR (G enome D atabase for R osaceae): integrated web resources for Rosaceae genomics and genetics research S Jung, C Jesudurai, M Staton, Z Du, S Ficklin, I Cho, A Abbott, J Tomkins, ... BMC bioinformatics 5, 1-8, 2004 | 134 | 2004 |
The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks SP Ficklin, F Luo, FA Feltus Plant physiology 154 (1), 13-24, 2010 | 123 | 2010 |
Chestnut resistance to the blight disease: insights from transcriptome analysis A Barakat, M Staton, CH Cheng, J Park, NMB Yassin, S Ficklin, CC Yeh, ... BMC Plant Biology 12, 1-15, 2012 | 106 | 2012 |
Structural and functional annotation of eukaryotic genomes with GenSAS JL Humann, T Lee, S Ficklin, D Main Gene prediction: methods and protocols, 29-51, 2019 | 99 | 2019 |
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture L Harper, J Campbell, EKS Cannon, S Jung, M Poelchau, R Walls, ... Database 2018, bay088, 2018 | 83 | 2018 |
Tripal: a construction toolkit for online genome databases SP Ficklin, LA Sanderson, CH Cheng, ME Staton, T Lee, IH Cho, S Jung, ... Database 2011, bar044, 2011 | 81 | 2011 |
Massive-scale gene co-expression network construction and robustness testing using random matrix theory SM Gibson, SP Ficklin, S Isaacson, F Luo, FA Feltus, MC Smith PloS one 8 (2), e55871, 2013 | 68 | 2013 |
Tripal v1. 1: a standards-based toolkit for construction of online genetic and genomic databases LA Sanderson, SP Ficklin, CH Cheng, S Jung, FA Feltus, KE Bett, D Main Database 2013, bat075, 2013 | 61 | 2013 |
Discovering condition-specific gene co-expression patterns using gaussian mixture models: a cancer case study SP Ficklin, LJ Dunwoodie, WL Poehlman, C Watson, KE Roche, FA Feltus Scientific reports 7 (1), 8617, 2017 | 55 | 2017 |
A physical map of the Chinese chestnut (Castanea mollissima) genome and its integration with the genetic map GC Fang, BP Blackmon, ME Staton, CD Nelson, TL Kubisiak, BA Olukolu, ... Tree genetics & genomes 9, 525-537, 2013 | 49 | 2013 |
Dissecting the genetic architecture of aphanomyces root rot resistance in lentil by QTL mapping and genome-wide association study Y Ma, A Marzougui, CJ Coyne, S Sankaran, D Main, LD Porter, D Mugabe, ... International Journal of Molecular Sciences 21 (6), 2129, 2020 | 46 | 2020 |