| Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination J Cudini, S Roy, CJ Houldcroft, JM Bryant, DP Depledge, H Tutill, P Veys, ... Proceedings of the National Academy of Sciences 116 (12), 5693-5698, 2019 | 147 | 2019 |
| A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing SB Kingan, H Heaton, J Cudini, CC Lambert, P Baybayan, BD Galvin, ... Genes 10 (1), 62, 2019 | 123 | 2019 |
| A single-cell atlas of Plasmodium falciparum transmission through the mosquito E Real, VM Howick, FA Dahalan, K Witmer, J Cudini, C Andradi-Brown, ... Nature Communications 12 (1), 3196, 2021 | 60 | 2021 |
| Use of whole-genome sequencing of adenovirus in immunocompromised pediatric patients to identify nosocomial transmission and mixed-genotype infection CJ Houldcroft, S Roy, S Morfopoulou, BK Margetts, DP Depledge, ... The Journal of Infectious Diseases 218 (8), 1261-1271, 2018 | 47 | 2018 |
| A comprehensive characterization of chronic norovirus infection in immunodeficient hosts LAK Brown, C Ruis, I Clark, S Roy, JR Brown, AS Albuquerque, SY Patel, ... Journal of Allergy and Clinical Immunology 144 (5), 1450-1453, 2019 | 24 | 2019 |
| Mixed cytomegalovirus genotypes in HIV-positive mothers show compartmentalization and distinct patterns of transmission to infants J Pang, JA Slyker, S Roy, J Bryant, C Atkinson, J Cudini, C Farquhar, ... Elife 9, e63199, 2020 | 21 | 2020 |
| High viral diversity and mixed infections in cerebral spinal fluid from cases of varicella zoster virus encephalitis DP Depledge, J Cudini, S Kundu, C Atkinson, JR Brown, T Haque, ... The Journal of Infectious Diseases 218 (10), 1592-1601, 2018 | 20 | 2018 |
| Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses F Lassalle, MA Beale, T Bharucha, CA Williams, RJ Williams, J Cudini, ... Virus Evolution 6 (1), veaa012, 2020 | 16 | 2020 |
| A high-quality de novo genome assembly from a single mosquito using PacBio sequencing. Genes (Basel) 10: 62 SB Kingan, H Heaton, J Cudini, CC Lambert, P Baybayan, BD Galvin, ... | 6 | 2019 |
| Novel insights into the role of long non-coding RNA in the human malaria parasite, Plasmodium falciparum G Batugedara, XM Lu, B Hristov, S Abel, Z Chahine, T Hollin, D Williams, ... Nature communications 14 (1), 5086, 2023 | 5 | 2023 |
| A single-cell atlas of Plasmodium falciparum transmission through the mosquito. Nat Commun 12: 3196 E Real, VM Howick, FA Dahalan, K Witmer, J Cudini, C Andradi-Brown, ... | 5 | 2021 |
| Reply to Jensen and Kowalik: Consideration of mixed infections is central to understanding HCMV intrahost diversity CJ Houldcroft, J Cudini, RA Goldstein, J Breuer Proceedings of the National Academy of Sciences 117 (2), 818-819, 2020 | 4 | 2020 |
| Deciphering the non-coding code of pathogenicity and sexual differentiation in the human malaria parasite G Batugedara, XM Lu, S Abel, Z Chahine, B Hristov, D Williams, T Hollin, ... bioRxiv, 2022.10. 12.511630, 2022 | 2 | 2022 |
| A Low DNA Input Protocol for High-quality PacBio De Novo Genome Assemblies from Single Invertebrate Individuals SB Kingan, H Heaton, J Cudini, N Holroyd, A Tracey, CC Lambert, ... Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019 | 2 | 2019 |
| A single cell atlas of sexual development in Plasmodium falciparum SK Dogga, JC Rop, J Cudini, E Farr, A Dara, D Ouologuem, AA Djimde, ... bioRxiv, 2023.07. 16.547819, 2023 | | 2023 |
| Characterisation of Plasmodium parasite sexual commitment and development J Cudini | | 2022 |
