| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 17982 | 2019 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 2017 | 2559 | 2017 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1705 | 2018 |
| Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ... mSystems 2 (2), e00191-16, 2017 | 1566 | 2017 |
| Species-level functional profiling of metagenomes and metatranscriptomes EA Franzosa, LJ McIver, G Rahnavard, LR Thompson, M Schirmer, ... Nature methods 15 (11), 962-968, 2018 | 1473 | 2018 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1042 | 2018 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 784 | 2018 |
| Microbial community assembly and metabolic function during mammalian corpse decomposition JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ... Science 351 (6269), 158-162, 2016 | 547 | 2016 |
| Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts MB Sullivan, D Lindell, JA Lee, LR Thompson, JP Bielawski, ... PLOS Biology 4 (8), e234, 2006 | 538 | 2006 |
| Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism LR Thompson, Q Zeng, L Kelly, KH Huang, AU Singer, JA Stubbe, ... Proceedings of the National Academy of Sciences 108 (39), E757-E764, 2011 | 529 | 2011 |
| A novel sparse compositional technique reveals microbial perturbations C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ... MSystems 4 (1), 10.1128/msystems. 00016-19, 2019 | 380 | 2019 |
| Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments MB Sullivan, KH Huang, JC Ignacio‐Espinoza, AM Berlin, L Kelly, ... Environmental Microbiology 12 (11), 3035-3056, 2010 | 372 | 2010 |
| Exploring the vast diversity of marine viruses MYA Breitbart, LR Thompson, CA Suttle, MB Sullivan Oceanography 20 (2), 135-139, 2007 | 337 | 2007 |
| Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ... The ISME journal 13 (3), 576-587, 2019 | 301 | 2019 |
| Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus ER Zinser, D Lindell, ZI Johnson, ME Futschik, C Steglich, ML Coleman, ... PLOS ONE 4 (4), e5135, 2009 | 233 | 2009 |
| Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm JM Michaud, LR Thompson, D Kaul, JL Espinoza, RA Richter, ZZ Xu, ... Nature Communications 9 (1), 2017, 2018 | 146 | 2018 |
| Physiology and evolution of nitrate acquisition in Prochlorococcus PM Berube, SJ Biller, AG Kent, JW Berta-Thompson, SE Roggensack, ... The ISME Journal 9 (5), 1195, 2015 | 144 | 2015 |
| DNA sequencing as a tool to monitor marine ecological status KD Goodwin, LR Thompson, B Duarte, T Kahlke, AR Thompson, ... Frontiers in Marine Science 4, 107, 2017 | 126 | 2017 |
| Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature microbiology 7 (12), 2128-2150, 2022 | 114 | 2022 |
| EMP 16S Illumina amplicon protocol JG Caporaso, G Ackermann, A Apprill, M Bauer, D Berg-Lyons, J Betley, ... | 80 | 2018 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
