| Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex KM Smith, G Sancar, R Dekhang, CM Sullivan, S Li, AG Tag, C Sancar, ... Eukaryotic cell 9 (10), 1549-1556, 2010 | 252 | 2010 |
| Genome-Wide Characterization of Light-Regulated Genes in Neurospora crassa C Wu, F Yang, KM Smith, M Peterson, R Dekhang, Y Zhang, J Zucker, ... G3: Genes, Genomes, Genetics 4 (9), 1731-1745, 2014 | 99 | 2014 |
| The Neurospora crassa exocyst complex tethers Spitzenkörper vesicles to the apical plasma membrane during polarized growth M Riquelme, EL Bredeweg, O Callejas-Negrete, RW Roberson, S Ludwig, ... Molecular biology of the cell 25 (8), 1312-1326, 2014 | 93 | 2014 |
| Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica KR Pomraning, YM Kim, CD Nicora, RK Chu, EL Bredeweg, SO Purvine, ... Bmc Genomics 17, 1-18, 2016 | 83 | 2016 |
| Multi-omics Signature of Candida auris, an Emerging and Multidrug-Resistant Pathogen D Zamith-Miranda, HM Heyman, LG Cleare, SP Couvillion, GC Clair, ... MSystems 4 (4), 10.1128/msystems. 00257-19, 2019 | 64 | 2019 |
| A molecular genetic toolbox for Yarrowia lipolytica EL Bredeweg, KR Pomraning, Z Dai, J Nielsen, EJ Kerkhoven, SE Baker Biotechnology for Biofuels 10, 1-22, 2017 | 60 | 2017 |
| Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis KR Pomraning, S Wei, SA Karagiosis, YM Kim, AC Dohnalkova, BW Arey, ... PLoS One 10 (4), e0123188, 2015 | 57 | 2015 |
| The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion R Dekhang, C Wu, KM Smith, TM Lamb, M Peterson, EL Bredeweg, ... G3: Genes, Genomes, Genetics 7 (1), 129-142, 2017 | 42 | 2017 |
| Regulation of nitrogen metabolism by GATA zinc finger transcription factors in Yarrowia lipolytica KR Pomraning, EL Bredeweg, SE Baker Msphere 2 (1), 10.1128/msphere. 00038-17, 2017 | 39 | 2017 |
| Regulation of yeast-to-hyphae transition in Yarrowia lipolytica KR Pomraning, EL Bredeweg, EJ Kerkhoven, K Barry, S Haridas, ... MSphere 3 (6), 10.1128/msphere. 00541-18, 2018 | 36 | 2018 |
| Compartmentalized microchannel array for high-throughput analysis of single cell polarized growth and dynamics T Geng, EL Bredeweg, CJ Szymanski, B Liu, SE Baker, G Orr, JE Evans, ... Scientific Reports 5 (1), 16111, 2015 | 33 | 2015 |
| Epigenetics of filamentous fungi KM Smith, PA Phatale, EL Bredeweg, LR Connolly, KR Pomraning, ... Encyclopedia of molecular cell biology and molecular medicine, 1-43, 2012 | 29 | 2012 |
| Fungal ligninolytic enzymes and their applications MR Mäkelä, EL Bredeweg, JK Magnuson, SE Baker, RP De Vries, ... Microbiology Spectrum 4 (6), 10.1128/microbiolspec. funk-0017-2016, 2016 | 24 | 2016 |
| Library preparation and data analysis packages for rapid genome sequencing KR Pomraning, KM Smith, EL Bredeweg, LR Connolly, PA Phatale, ... Fungal Secondary Metabolism: Methods and Protocols, 1-22, 2012 | 22 | 2012 |
| Omics approaches for understanding biogenesis, composition and functions of fungal extracellular vesicles D Zamith-Miranda, R Peres da Silva, SP Couvillion, EL Bredeweg, ... Frontiers in Genetics 12, 648524, 2021 | 15 | 2021 |
| Integrative quantitative-phase and airy light-sheet imaging NR Subedi, PS Jung, EL Bredeweg, S Nemati, SE Baker, ... Scientific reports 10 (1), 20150, 2020 | 14 | 2020 |
| Alternative Oxidase Transcription Factors AOD2 and AOD5 of Neurospora crassa Control the Expression of Genes Involved in Energy Production and Metabolism Z Qi, KM Smith, EL Bredeweg, N Bosnjak, M Freitag, FE Nargang G3: Genes, Genomes, Genetics 7 (2), 449-466, 2017 | 12 | 2017 |
| Remodeling of the Histoplasma Capsulatum Membrane Induced by Monoclonal Antibodies MC Burnet, D Zamith-Miranda, HM Heyman, KK Weitz, EL Bredeweg, ... Vaccines 8 (2), 269, 2020 | 10 | 2020 |
| Bayesian Inference for Integrating Yarrowia lipolytica Multiomics Datasets with Metabolic Modeling AD McNaughton, EL Bredeweg, J Manzer, J Zucker, N Munoz Munoz, ... ACS Synthetic Biology 10 (11), 2968-2981, 2021 | 7 | 2021 |
| Multimodal microfluidic platform for controlled culture and analysis of unicellular organisms T Geng, CR Smallwood, EL Bredeweg, KR Pomraning, AE Plymale, ... Biomicrofluidics 11 (5), 2017 | 7 | 2017 |
