Robert Best
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Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
RB Best, X Zhu, J Shim, PEM Lopes, J Mittal, M Feig, AD MacKerell Jr
Journal of chemical theory and computation 8 (9), 3257-3273, 2012
Optimized molecular dynamics force fields applied to the helix− coil transition of polypeptides
RB Best, G Hummer
The journal of physical chemistry B 113 (26), 9004-9015, 2009
Simultaneous determination of protein structure and dynamics
K Lindorff-Larsen, RB Best, MA DePristo, CM Dobson, M Vendruscolo
Nature 433 (7022), 128-132, 2005
Polarizable atomic multipole-based AMOEBA force field for proteins
Y Shi, Z Xia, J Zhang, R Best, C Wu, JW Ponder, P Ren
Journal of chemical theory and computation 9 (9), 4046-4063, 2013
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
Extreme disorder in an ultrahigh-affinity protein complex
A Borgia, MB Borgia, K Bugge, VM Kissling, PO Heidarsson, ...
Nature 555 (7694), 61-66, 2018
Balanced protein–water interactions improve properties of disordered proteins and non-specific protein association
RB Best, W Zheng, J Mittal
Journal of chemical theory and computation 10 (11), 5113-5124, 2014
Phosphorylation of the FUS low‐complexity domain disrupts phase separation, aggregation, and toxicity
Z Monahan, VH Ryan, AM Janke, KA Burke, SN Rhoads, GH Zerze, ...
The EMBO journal 36 (20), 2951-2967, 2017
Are current molecular dynamics force fields too helical?
RB Best, NV Buchete, G Hummer
Biophysical journal 95 (1), L07-L09, 2008
Reaction coordinates and rates from transition paths
RB Best, G Hummer
Proceedings of the National Academy of Sciences 102 (19), 6732-6737, 2005
Native contacts determine protein folding mechanisms in atomistic simulations
RB Best, G Hummer, WA Eaton
Proceedings of the National Academy of Sciences 110 (44), 17874-17879, 2013
Sequence determinants of protein phase behavior from a coarse-grained model
GL Dignon, W Zheng, YC Kim, RB Best, J Mittal
PLoS computational biology 14 (1), e1005941, 2018
Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations
KA Merchant, RB Best, JM Louis, IV Gopich, WA Eaton
Proceedings of the National Academy of Sciences 104 (5), 1528-1533, 2007
Biomolecular phase separation: from molecular driving forces to macroscopic properties
GL Dignon, RB Best, J Mittal
Annual review of physical chemistry 71, 53-75, 2020
Coordinate-dependent diffusion in protein folding
RB Best, G Hummer
Proceedings of the National Academy of Sciences 107 (3), 1088-1093, 2010
Hidden complexity in the mechanical properties of titin
PM Williams, SB Fowler, RB Best, J Luis Toca-Herrera, KA Scott, ...
Nature 422 (6930), 446-449, 2003
Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation
RB Best, B Li, A Steward, V Daggett, J Clarke
Biophysical journal 81 (4), 2344-2356, 2001
Protein simulations with an optimized water model: cooperative helix formation and temperature-induced unfolded state collapse
RB Best, J Mittal
The journal of physical chemistry B 114 (46), 14916-14923, 2010
Relation between single-molecule properties and phase behavior of intrinsically disordered proteins
GL Dignon, W Zheng, RB Best, YC Kim, J Mittal
Proceedings of the National Academy of Sciences 115 (40), 9929-9934, 2018
Single-molecule spectroscopy of the temperature-induced collapse of unfolded proteins
D Nettels, S Müller-Späth, F Küster, H Hofmann, D Haenni, S Rüegger, ...
Proceedings of the National Academy of Sciences 106 (49), 20740-20745, 2009
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