| The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes D Floudas, M Binder, R Riley, K Barry, RA Blanchette, B Henrissat, ... Science 336 (6089), 1715-1719, 2012 | 1818 | 2012 |
| MycoCosm portal: gearing up for 1000 fungal genomes IV Grigoriev, R Nikitin, S Haridas, A Kuo, R Ohm, R Otillar, R Riley, ... Nucleic acids research 42 (D1), D699-D704, 2014 | 1401 | 2014 |
| Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists A Kohler, A Kuo, LG Nagy, E Morin, KW Barry, F Buscot, B Canbäck, ... Nature genetics 47 (4), 410-415, 2015 | 1025 | 2015 |
| Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi R Riley, AA Salamov, DW Brown, LG Nagy, D Floudas, BW Held, ... Proceedings of the National Academy of Sciences 111 (27), 9923-9928, 2014 | 759 | 2014 |
| The plant cell wall–decomposing machinery underlies the functional diversity of forest fungi DC Eastwood, D Floudas, M Binder, A Majcherczyk, P Schneider, A Aerts, ... Science 333 (6043), 762-765, 2011 | 635 | 2011 |
| The genome portal of the department of energy joint genome institute IV Grigoriev, H Nordberg, I Shabalov, A Aerts, M Cantor, D Goodstein, ... Nucleic acids research 40 (D1), D26-D32, 2012 | 622 | 2012 |
| Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus RP De Vries, R Riley, A Wiebenga, G Aguilar-Osorio, S Amillis, ... Genome biology 18, 1-45, 2017 | 466 | 2017 |
| Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche E Morin, A Kohler, AR Baker, M Foulongne-Oriol, V Lombard, LG Nagye, ... Proceedings of the National Academy of Sciences 109 (43), 17501-17506, 2012 | 446 | 2012 |
| Phylogenetic and phylogenomic overview of the Polyporales M Binder, A Justo, R Riley, A Salamov, F Lopez-Giraldez, E Sjökvist, ... Mycologia 105 (6), 1350-1373, 2013 | 370 | 2013 |
| Comparative genomics of biotechnologically important yeasts R Riley, S Haridas, KH Wolfe, MR Lopes, CT Hittinger, M Göker, ... Proceedings of the National Academy of Sciences 113 (35), 9882-9887, 2016 | 338 | 2016 |
| Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ... Nature communications 11 (1), 5125, 2020 | 322 | 2020 |
| Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis E Fernandez-Fueyo, FJ Ruiz-Dueńas, P Ferreira, D Floudas, DS Hibbett, ... Proceedings of the National Academy of Sciences 109 (14), 5458-5463, 2012 | 322 | 2012 |
| TB database: an integrated platform for tuberculosis research TBK Reddy, R Riley, F Wymore, P Montgomery, D DeCaprio, R Engels, ... Nucleic acids research 37 (suppl_1), D499-D508, 2009 | 283 | 2009 |
| Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities LG Nagy, R Riley, A Tritt, C Adam, C Daum, D Floudas, H Sun, JS Yadav, ... Molecular biology and evolution 33 (4), 959-970, 2016 | 253 | 2016 |
| Megaphylogeny resolves global patterns of mushroom evolution T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ... Nature ecology & evolution 3 (4), 668-678, 2019 | 247 | 2019 |
| Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri TC Vesth, JL Nybo, S Theobald, JC Frisvad, TO Larsen, KF Nielsen, ... Nature Genetics 50 (12), 1688-1695, 2018 | 193 | 2018 |
| Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii D Floudas, BW Held, R Riley, LG Nagy, G Koehler, AS Ransdell, ... Fungal Genetics and Biology 76, 78-92, 2015 | 193 | 2015 |
| Inferring protein domain interactions from databases of interacting proteins R Riley, C Lee, C Sabatti, D Eisenberg Genome biology 6, 1-17, 2005 | 193 | 2005 |
| Assessing the impact of alternative splicing on domain interactions in the human proteome A Resch, Y Xing, B Modrek, M Gorlick, R Riley, C Lee Journal of proteome research 3 (1), 76-83, 2004 | 178 | 2004 |
| Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria G Sipos, AN Prasanna, MC Walter, E O’Connor, B Bálint, K Krizsán, ... Nature ecology & evolution 1 (12), 1931-1941, 2017 | 159 | 2017 |
