| Logomaker: Beautiful sequence logos in python A Tareen, JB Kinney Bioinformatics, btz921, https://doi.org/10.1093/bioinformatics/btz921, 2020 | 310 | 2020 |
| MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect A Tareen, A Posfai, WT Ireland, DM McCandlish, JB Kinney Genome Biology, 2022 | 40* | 2022 |
| Evolution of DNA replication origin specification and gene silencing mechanisms Y Hu, A Tareen, YJ Sheu, WT Ireland, C Speck, H Li, L Joshua-Tor, ... Nature communications 11 (1), 5175, 2020 | 27 | 2020 |
| Density estimation on small datasets WC Chen, A Tareen, JB Kinney Physical Review Letters 121 (16), 160605, 2018 | 21 | 2018 |
| Biophysical models of cis-regulation as interpretable neural networks A Tareen, JB Kinney 14th Machine Learning in Computational Biology (MLCB) meeting, 2019 | 20 | 2019 |
| Modeling evolution of crosstalk in noisy signal transduction networks A Tareen, NS Wingreen, R Mukhopadhyay Physical Review E 97 (2), 020402, 2018 | 13 | 2018 |
| Structural and mechanistic basis of σ-dependent transcriptional pausing C Pukhrambam, V Molodtsov, M Kooshkbaghi, A Tareen, H Vu, ... Proceedings of the National Academy of Sciences 119 (23), e2201301119, 2022 | 5 | 2022 |
| Configurations and path planning of convex planar polygonal loops L Han, L Rudolph, M Chou, S Corbett, E Eagle, D Glotzer, J Kramer, ... Algorithmic Foundations of Robotics X, 53-69, 2013 | 4 | 2013 |
| mavenn Documentation A Tareen, JB Kinney | | 2023 |
| Asymmetry between Activators and Deactivators in functional protein networks A Tareen, NS Wingreen, R Mukhopadhyay Scientific reports 10 (1), 10131, 2020 | | 2020 |
| Information transmission and evolution of crosstalk in noisy signal transduction networks A Tareen, N Wingreen, R Mukhopadhyay APS March Meeting Abstracts 2019, F66. 003, 2019 | | 2019 |
| Evolution of Complexity in Bio-physical Networks A Tareen ProQuest Dissertations Publishing, 2017. 10608615., 2017 | | 2017 |
| Additional file 1: Appendix for “MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect” A Tareen, M Kooshkbaghi, A Posfai, WT Ireland, DM McCandlish, ... | | |
| Supplemental Information: MAVE-NN: Quantitative Modeling of Genotype-Phenotype Maps as Information Bottlenecks A Tareen, WT Ireland, A Posfai, DM McCandlish, JB Kinney | | |
Justin B. KinneyCold Spring Harbor LaboratoryVerified email at cshl.edu
