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Yanay Ofran
Yanay Ofran
Unknown affiliation
Verified email at ofranlab.org
Title
Cited by
Cited by
Year
The structural basis of antibody-antigen recognition
I Sela-Culang, V Kunik, Y Ofran
Frontiers in immunology 4, 64858, 2013
6322013
Analysing six types of protein–protein interfaces
Y Ofran, B Rost
Journal of molecular biology 325 (2), 377-387, 2003
5462003
Automatic prediction of protein function
B Rost, J Liu, R Nair, KO Wrzeszczynski, Y Ofran
Cellular and Molecular Life Sciences CMLS 60, 2637-2650, 2003
3402003
ISIS: interaction sites identified from sequence
Y Ofran, B Rost
Bioinformatics 23 (2), e13-e16, 2007
3382007
Predicted protein–protein interaction sites from local sequence information
Y Ofran, B Rost
FEBS letters 544 (1-3), 236-239, 2003
3362003
Protein–protein interaction hotspots carved into sequences
Y Ofran, B Rost
PLoS computational biology 3 (7), e119, 2007
3092007
Towards a consensus on datasets and evaluation metrics for developing B‐cell epitope prediction tools
JA Greenbaum, PH Andersen, M Blythe, HH Bui, RE Cachau, J Crowe, ...
Journal of Molecular Recognition: An Interdisciplinary Journal 20 (2), 75-82, 2007
2892007
Prediction of DNA-binding residues from sequence
Y Ofran, V Mysore, B Rost
Bioinformatics 23 (13), i347-i353, 2007
2052007
How far from the SNP may the causative genes be?
A Brodie, JR Azaria, Y Ofran
Nucleic acids research 44 (13), 6046-6054, 2016
1882016
Structural consensus among antibodies defines the antigen binding site
V Kunik, B Peters, Y Ofran
PLoS computational biology 8 (2), e1002388, 2012
1762012
Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure
V Kunik, S Ashkenazi, Y Ofran
Nucleic acids research 40 (W1), W521-W524, 2012
1592012
Land degradation is not a necessary outcome of communal pastoralism in arid Namibia
D Ward, BT Ngairorue, J Kathena, R Samuels, Y Ofran
Journal of Arid Environments 40 (4), 357-371, 1998
1481998
The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function
M Punta, Y Ofran
PLoS computational biology 4 (10), e1000160, 2008
1412008
A systematic comparison of free and bound antibodies reveals binding-related conformational changes
I Sela-Culang, S Alon, Y Ofran
The Journal of Immunology 189 (10), 4890-4899, 2012
1232012
Epitome: database of structure-inferred antigenic epitopes
A Schlessinger, Y Ofran, G Yachdav, B Rost
Nucleic acids research 34 (suppl_1), D777-D780, 2006
1072006
Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery
Y Ofran, M Punta, R Schneider, B Rost
Drug discovery today 10 (21), 1475-1482, 2005
1032005
Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes
Y Ofran, A Schlessinger, B Rost
The Journal of Immunology 181 (9), 6230-6235, 2008
1002008
The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops
V Kunik, Y Ofran
Protein Engineering, Design & Selection 26 (10), 599-609, 2013
972013
Antibody specific epitope prediction—emergence of a new paradigm
I Sela-Culang, Y Ofran, B Peters
Current opinion in virology 11, 98-102, 2015
852015
Using a combined computational-experimental approach to predict antibody-specific B cell epitopes
I Sela-Culang, MREI Benhnia, MH Matho, T Kaever, M Maybeno, ...
Structure 22 (4), 646-657, 2014
782014
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